Comparisons between phylogenetic topologies inferred from single mt protein-coding (PC) genes relative to that of the “supergene” set.

<p>Presented as 1) decreases in Ln <i>L</i> (± S.E.M.) compared to the “supergene” phylogeny (i.e., all 13 PC genes, left <i>y</i>-axis) and 2) proportion of lineages where the “supergene” topology was recovered (right <i>y</i>-axis). The three “best” performing genes (i.e., ND5, ND2, ND1) are bolded and italicized along the <i>x</i>-axis. Single-gene phylogenies utilized amino acid data and were inferred via maximum likelihood for 63 datasets with > 40 OTUs and/or having previously published phylogenies (see text for details).